表观遗传学在线资源及工具/Selected Online Resources for Epigenetics
时间:2017/05/10

Consortia and Initiatives
The NIH Roadmap Epigenomics Program
A NIH Initiative to foster epigenomic research, develop comprehensive reference epigenome maps, and generate new technologies for comprehensive epigenomic analyses.

http://nihroadmap.nih.gov/epigenomics/ 

 
The Epigenome Network of Excellence
An EU-funded network of institutions and research groups

http://www.epigenome-noe.net/Whttp://nihroadmap.nih.gov/epigenomics/ WW/index.php 

The Human Epigenome Projects
A public/private collaboration to catalogue Methylation Variable Positions (MVPs) in the human genome

http://www.epigenome.org/ 

NAME21
A German National Initiative to analyze DNA methylation Patterns of Genes on Chromosome 21

http://biochem.jacobs-university.de/name21/ 

Databases
The Human Epigenome Atlas
The atlas includes human reference epigenomes and the results of their integrative and comparative analyses.

http://www.genboree.org/epigenomeatlas/index.rhtml 

MethDB
A searchable database for DNA methylation and environmental epigenetic effects

http://www.methdb.de/ 

Human Histone Modification Database (HHMD)
A searchable database of information from experimental data to facilitate understanding of histone modifications at a systematic level. The current release incorporates 43 location-specific histone modifications in human.

http://bioinfo.hrbmu.edu.cn/hhmd 

NCBI Epigenomics
An online repository of epigenetic datasets

http://www.ncbi.nlm.nih.gov/epigenomics/browse 

GeneImprint
A catalogue of imprinted genes

http://www.geneimprint.com/site/genes-by-species 

Catalogue of Parent of Origin Effects
Searchable database of imprinted genes and related effects

http://igc.otago.ac.nz/home.html 

Tools and Other Resources
MethPrimer
Primer Design for Methylation PCR

http://www.urogene.org/methprimer/index1.html 

MethBlast
A sequence similarity program that checks your primers for bisulfite converted DNA by blasting them against unmethylated and methylated genomic sequences of man, mouse and rat

http://medgen.ugent.be/methBLAST/ 

Methylator
Methylator attempts to predict whether CpGs in a DNA sequence are likely to be methylated or not

http://bio.dfci.harvard.edu/Methylator/ 

RMAP
RMAP is a tool to map reads from the next-generation sequencing technology that supports bisulfite-treated reads mapping.

http://rulai.cshl.edu/rmap/ 

Chromatin Structure & Function
Information on chromatin biology, histones and epigenetics

http://www.chromatin.us/chrom.html 

Epigenetic Station
A source for information, protocols, methods, techniques, products, vendors, kits, assays, analysis, bioinformatics and databases on Epigenetics

http://epigeneticstation.com/